Organises the raw data output for 1 or more plates and plots the distribution.
Usage
computeFvFm_PSII(
data,
plate_names,
layout,
smartsheet,
copynumber,
output_location,
width = 20,
height = 21
)Arguments
- data
data.frame or list of data.frame; from FluorCam software (frames-numeric)
- plate_names
character; name of plates.
- layout
data.frame or list of data.frame; plate layout.
- smartsheet
data.frame; selection results, ie BASTA.
- copynumber
data.frame; copy number results.
- output_location
path; location to save output files
- width
numeric; pdf width size. deafult is 20.
- height
numeric;pdf height size. deafult is 21.
Value
Returns a list of dataframes, where each plates has a dataframe for FvFm and PSII. Saves an excel file containing all data and a plot for FvFm and PSII.
Details
Takes as input a single dataframe or a list of dataframe. Save data as chlorofluoro_dataset_1.xlsx and plots as chlorofluoro_plot_1.pdf in desired directory.
Examples
data("CF_demodata")
data("layout")
data("selection_results")
data("copynumber")
output_location <- tempdir()
step_one <- computeFvFm_PSII(CF_demodata,
plate_names = names(CF_demodata),
layout,
smartsheet = selection_results,
copynumber,
output_location)
#> Data saved to /tmp/Rtmpmm6ZbD/chlorofluoro_dataset_1.xlsx
#> Plots saved to /tmp/Rtmpmm6ZbD/chlorofluoro_plot_1.pdf
#> Returned data